WebCONCLUSIONS: Our analyses of new samples with new tools provide a revised view of paleopolyploidy in the Compositae. Together with results from a high ... by searching for evidence of multiplied blocks of collinear genes in syntenic data from whole genome sequences or linkage mapping studies. For example, paleohexaploidy has been inferred … WebMAPS: Multi-tAxon Paleopolyploid Search algorithm. Current version of the MAPS (Li et al. 2015; Li et al. 2024) scripts and accompanying simulation code for identifying shared …

Code — Barker Lab

Web20 nov. 2015 · We also introduce a newly developed algorithm, Multi-tAxon Paleopolyploidy Search (MAPS), to place inferred paleopolyploid events in phylogenetic context. For each node in a phylogeny, MAPS evaluates the percentage of gene duplications shared by all taxa descended from that node. Ancient WGDs are identified … Web6 mai 2016 · infer and locate paleopolyploidy in our data sets, we used our recently developed gene tree sorting and counting algorithm, the Multi-tAxon Paleopolyploidy Search (MAPS) tool (Li et al., 2015 ... michas marktplatz

GigaScience

Web27 mai 2024 · Within-genome sequence similarity searches, followed by MCL clustering, were used to detect paralogous gene pairs (see “ Methods ”), the number of which varied widely among the analyzed hexapod genomes, ranging from 1225 in the collembolan Holacanthella duospinosa to 21,073 in the dipteran Aedes aegypti (Table S 1 ). Web20 nov. 2015 · We also introduce a newly developed algorithm, Multi-tAxon Paleopolyploidy Search (MAPS), to place inferred paleopolyploid events in phylogenetic context. For each node in a phylogeny, MAPS evaluates the percentage of gene duplications shared by all taxa descended from that node. Web30 dec. 2013 · These phylogenies were assessed for evidence of a paleopolyploidy event within the genus Linum.Key ResultsA previously unknown paleopolyploidy event that occurred 20-40 million years ago was ... micha stafford